Yeah, this has been finicky for me too. Itās been a while, but my recollection is that quitting and reopening obsidian numbering works again.
Anyway, the whole equation numbering issue is unworkable in Obsidian. If one has to put in the numbers with tag{1}, the elegance and power of Latex equation numbering is lost. The whole point is to avoid manual numbering.
This is a fundamental and deep flaw (IMO) that precludes long form writing involving mathematics and equations in Obsidian ā without tedious manual intervention, such as tag{1}, and hackery (regex search-replace after moving text into a Latex-friendly environment).
If frustration is evident in this post, it is genuine and not meant to disparage or insult the developers for whom I have great respect and admiration for a stellar app.