#106

Check section “Get links to PDF” in this post Zotero best practices or jump directly to description Zotero best practices

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#107

Np! basically you can just copy and paste the file into the “translators” folder within the Zotero directory.

On macos, it looks like “/username/Zotero/translators”

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#108

Sometimes when I use the translator I was getting NaN for the year, even if the year is present in the metadata, for example:
Kosciessa. NaN. Standard multiscale entropy reflects neural dynamics at mismatched temporal scales: What’s signal irregularity got to do with it?

Now I replaced it with the latest translator from github and I am getting also day date Kosciessa. 11-May-2020. Standard multiscale entropy reflects neural dynamics at mismatched temporal scales: What’s signal irregularity got to do with it?

I filled issue on github too

EDIT: The issue was solved really fast <3

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#109

Have a look at Bryan’s workflow “Comprehensive Obsidian & Zotero Workflow For Zettelkasten & Evergreen Notes :memo:”

He is a great contributor to the community. :pray:

21 Likes
#110

Hey thanks for the plug! :blush:

6 Likes
#111

4 posts were split to a new topic: Is sliding panes a downloadable plugin?

#112

I haven’t tried this, but I’d imagine you could use Pandoc citations and then use Pandoc coupled with bibtex references to generate fully referenced PDFs. Zotero can export bibtex files.

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#113

Wow! I just joined the Obsidian forum based on recommendations of how friendly the forum and contributors are towards new folk. I am truly impressed and glad I decided to use Obsidian. Thank you for making the time available for such a detailed guide.

6 Likes
#114

I noticed a small bug maybe.
When I am trying to export a single extracted file as markdown, it doesn’t have a link to the zotero back while when I batch export the same thing, it has it correctly.
Could you please check it, if its only me or others as well?

#115

Hi @DummyME! Could you open an issue in GitHub for that? It depends a lot on your settings, so if you can could you add screenshots of them and a GIF of what you’re trying to do to the GitHub issue? Thanks!

#116

Thanks for the thorough guide here. You mentioned exporting everything in one file. However, I haven’t been able to figure out a way to export in a single a file’s metadata and extracted notes. The reason seems to be what is being selected at the time of exporting. If I select extracted annotations then notes are properly exported. However, this means I need to make at least two exports in order to get a file’s metadata and notes.
I submitted an enhancement on GitHub but wanted to ask here in case you know if this is doable.

Thanks!

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#117

Just replied in GitHub, but to summarize here: make sure the Single file option is selected in the settings and use Batch export from the menu.

2 Likes
#118

Thanks a lot for your response. I was able to get the file to export the way I wanted it. Here is a screenshot in case anybody is interested. On top of the configuration you mentioned, I also had to create and modify all the mdnotes template files in order to avoid duplicate or extra information I didn’t want to. In case people are interested, config is: Md Notes Default Template.md and Standalone Note Template files are empty, Zotero Metadata Template is default (plus the {{cloudLibrary}} placeholder, and Zotero. Note Template only has a “## Notes and Highlights” heading and a {{noteContent}} placeholder.

Quick question: I noticed the export creates a double space at the beginning of the file but I can’t control that configuration via template. Is there any way to modify that? Thanks!

Screen Shot 2021-01-14 at 9.46.05 AM
Screen Shot 2021-01-14 at 9.46.05 AM2968×2108 896 KB

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New plugin: Citations (with Zotero)
#119

@argentum just want to say thank you for the overview and the mdnotes plugin! This convinced me to take my notes in pdf (had been going back and forth) and extract them via zotero to Obsidian’s vault as a literature note. Using the betterbibtex citekey as a title, it also allowed me to then convert a markdown file in Obisidian with the references to the (exported) literature notes to a word docx with active references (via pandoc’s ability to use the better bibtex citeky). This closed the circle for me!
And if I want to exceptionally use a screenshot from the pdf instead of annoted text I can just copy/paste it quickly in obisidian and copy/paste the link back to the pdf in a note, allowing me to have a full, rich view of the literature that I can just keep on quickly overwriting in Obsidian anytime I annotate the pdf again - while keeping the links in Obsidian to that literature note.

So… just thanks!

8 Likes
#120

Thank you for this clarification. For my part, I have the impression that the changes in Zotero Metadata Template have no effect. I stay with the standard template :thinking:

#121

The first two line is from the Default note template which you have deleted blank.
A blank file must contains at least one empty line -> this is the first empty line.
Each template file is separate by one line in the aggregated file -> This is your second blank line.

I resolve this problem by moving the {{title}} from Metadata template to the Default note template.

#122

Hello everyone,

I am new to Obsidian and not long ago I discovered the workflow that @argentum published and that I was also able to provide feedback with Anthony Gold’s interview with Bri Watson. Everything was going well, however, lately I have had problems with exporting the single batch file in MDNotes since it does not appear, but the .md of the annotations does appear.

Note: I have full Zotero storage (free plan), sometimes I restart the plugin and re-create the batch, but the function does not last long.

Greetings to the community

#123

Hi @jcmoral, there was a recent update that made the context menu a bit more context-aware, see here. I also updated the docs over here. If that doesn’t solve the problem, please ping me on discord or open a new issue in mdnotes so we can debug what’s going on.

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#124

Since this is a thread on “Zotero best practices”, I thought I write my question here:

Where do you save your literature notes? In Zotero or Obsidian?

I am right now somewhere in the middle. Some lit. notes are saved in Zotero, others in Obsidian. The ones I saved in Obsidian are connected to projects I am currently working on/interested in. The notes saved in Zotero have contents that “might be of some interest for my future self”. However, I guess I am doing it wrong by splitting my database of notes into two different platforms. What do you think?

#125

@welstand I don’t think there is a one-size fits all solution here, it boils down to what you want to use those notes for. Personally, I don’t write/store notes in Zotero at all. Zotero is primarily a reference manager, it can store notes, yes, but they will be stored away in their database, inaccessible to anything else, not to mention that note-taking there is a bit painful. All those notes will be siloed into whatever reference you’ve attached it into instead of linked to your other ideas.

Obsidian is primarily a note-taking app! It makes it easy to link those “might be interesting” notes with other ideas or problems you might be working on right now! My exported notes go into a folder in my vault (this allows for easy filtering if you want to make clear distinctions). I only send things to my vault if I already have a) read them (and most likely annotated them), b) have a use for them (e.g. I’m probably reading this paper because it’s related to a project I’m working on. If a paper I read is not useful for that project, those notes don’t get extracted & exported).

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