For me the typical workflow is, that I add consecutively informations to a topic in a md. File and organize them there.
When the file gets to big, or a subtopic stands out, I create for it its own file with an link pointing to it.
In this way the notes grow organically and new notes are created when necessary.
To make this workflow even faster, the plug-in would convert the selected section (beginning with a heading and the hierarchy being conserved) to its own md. And creates a link pointing to the file at the place of the previous heading.