Is there any new insight on the deleted files? I am having the same problem. Files mysteriously deleted. I am using Obsidian sync. I have started using sync 6 days ago - the first deleted file is from 5 days ago. I am using a number of plugins.
I have just discovered this issue and have only tried to recover one file so far: With this the recovery worked in so far that the note as such reappeared, but in a separate entry. I now have two notes with the same title - at least in my search; but I think also actual. The link pointing to the formerly deleted file is now signalling that there is an existing file for this link (dark blue in my case). But when I click on the link I am directed to the empty note (as before the recovery). I can, however, access the recovered note - e.g. via the search.
This is pretty scary for me - it would obviously be great to find a solution here. I am going to start recovering my files and hope that I can recover all of them.
I am syncing one vault from a Windows PC to another Windows PC and two mobile devices (iPhone, iPad). Don’t know if this is of any relevance.
Further to my post:
The largest portion of deletions seems to be connected to my activity of 3 days ago when I moved a large number of my notes into different folders - using the system explorer since moving several files at once is not possible in Obsidian. But there are also deletions before and after that which I can not place in that context. I am pretty sure that Obsidian has “noticed” the moved notes correctly and I am pretty sure that I could link to the moved files without a problem everywhere I did that - the autocomplete showing me the whole file path of where the file now is located.
When I try to reconnect the link with the (deleted and recovered) note, autocomplete shows me the single (empty) file in the original (“home”) location and the (apparently) recovered file in the location / path I had moved the file to. When I connect the file in the new location the link is then showing the path and the filename (“folder/notetitle.md”) which it previously had not.
Sorry about the lengthy description of the problem. Maybe some of the details are useful for understanding the issue. Happy to learn if there are certain things I shouldn’t be doing with the files.
2nd update:
This is going to take a while to repair … there are roughly 800 deleted files and I have to reconnect (or copy to clipboard and paste) for every single one … (or maybe I should go to system trash and move the files from there into the system explorer - it’s probably superstitious but after what happened after my last system explorer operation I am not sure if that is a good idea)
3rd update:
They are not there in the system trash … hoping the best for my recovery. Actually this is not what I expected when I decided to pay for sync. I love Obsidian but this is my first setback.