I don’t know if it’s on the roadmap or not, but you could always programmatically rename these files!
On Linux, or with GNU utilities installed on a Mac, you would use:
while read f; do mv "$f" "${f%%.markdown}.md" ; done < <(find . -iname '*.markdown')
I’m sure there are some Windows wizzs here who could help you with that if necessary!
Yeah, other apps exporting textbundles are coming with a .markdown file instead of .md. I thought it was a bug when I first tried to open the .markdown and it went over to TextEditor (default app). I changed the file name to .md and it opened in Obsidian, no problem for me.
The big problem here is a new user to Obsidian wouldn’t understand why their “markdown” .markdown file isn’t opening in an app that is designed for markdown.