As I understand it, that’s exactly @christ-is-real’s point: Obsidian is no mind-map software and a simple graph view as it is currently implemented makes the graph view less useful and more like a mind-map tool (but with notes instead of thoughts). At least, there is the linking direction. But a logical connection between notes would make it much more useful semantically. I understand that this would diverge from the markdown standard but one could think of an additional semantification of links in the metadata (aka »properties«).
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