I have a similiar case, Almost everytime after quiting obsidian, and upon opening it again. I get the message:
This usualy happens without me ever moving the safe mode toggle at all.
Seems like obsidian forgets that I already toggled it on.
Thanfully my plugins are still installed, but every plugin is toggled off.
It get’s pretty annoying to toggle them all manually every time.
I’m not sure if this might be a bug with linux, I’m on linux manajro using obsidian through appimage version 0.9.22
@elmsfeuer 's request to remember which plugins where toggled on would be really helpful.
Thanks!