Bumping this so it doesn’t get closed for inactivity. I have timing logs with and without plugins on Android, and with on Win 11 here. I have a few ten thousand md files, and many more non-md files. Another possible cause might be obsidian doing more than it should be with files it should skip after seeing only the filenames (like exe or o or dll or similar) (which could also be related to the “should only happen once” message coming up multiple times for some people, and to that process getting stuck for a long time on some of its counted numbers).
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